PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0565.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 513aa    MW: 57837.5 Da    PI: 9.1158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0565.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12338384455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e ++sLq
  Bostr.26833s0565.1.p 338 NHMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAREQLSSLQ 384
                           68899********************97.....8***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-15332396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-11336388No hitNo description
Gene3DG3DSA:4.10.280.109.7E-13337398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDAFFLTDDP NTRKQFIGSL AQAFGCVYVC LWSYYFPRPS NYLISMDGYY YEASEEPSSS  60
SGNLARSLFL EYRQSVIPLQ NGHVPSMAFM NNLPYVEIRP QEIQRLAYND AQRLFYQTVI  120
FMGCRSGEIE LGMTYDAANM KIEASLREWF PEDFNRNSSP VDSDYLRPSH HPSSSSSSLS  180
PNKVSEYSSL LSPLIPKPST TTDAVNAPVH PLLAPINMIH QQQQEPLFRN REREEEAMTQ  240
AILAVLTRPS SSPPSTSSSP LRKGRATAFK RYYCMISGGG RALPPSVRKQ SMMKRAISFY  300
NRLNIHRRER FATTGGDGNG GSGGGGRYTS GPSATQLNHM ISERKRREKL NESFQALRSL  360
LPPGTKKDKA SVLTIAREQL SSLQGEISKL LERNREAKLA GEREIENDLQ PDERFNIRIR  420
HIPESTSRET ILDLRVVLRG DIIRVDDLMI RLLEFLKQIN NVSLVSIEAR TRARADGDSS  480
VVLVNLRLRI EGEWDESAFQ EAVRRVVADL AH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342347ERKRRE
2343348RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483181.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGAT5G56960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein